species:   Fugra
pid:       PID0989
parent:    FgmilR-7dps-01
paralog:   
locus:     NC_026474.1:301488-301553
matures:   ['UGAGAUACUCUUGAAGCUGUGCU', 'UACUGGCGAAUCGAGGAAUCUCUGA']
srr:       SRR6516243
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram NC_026474.1:301488-301553

5 out of bounds
5 alignments
5 proper strand
3 stranded perfect matches

           **********************  ***********************        
AGUACUGGCGAAUCGAGGAAUCUCUGAGGAAGCUUGAUGACUUUGAGAUACUCUUGAAGCUGUGCU
(((((.(((...((((((.(((((.(((..(......)..))).))))).).))))).))))))))
-------------------------------------------UGAGAUACUCUUGAAGCUGUGCU l=23 a=0 c
--UACUGGCGAAUCGAGGAAUCUCUGA--------------------------------------- l=25 a=0 c*
------------UCGAGGAAUCUCUGAGGAAGCUUG------------------------------ l=24 a=1 ma
--UACUGGCGAAUCGAGGAAUCUCUGA--------------------------------------- l=25 a=0 ma*

------------UCGAGGAAUCUCUGAGGAAGCUUG------------------------------ l=24 a=1 (ma)
------------------------UGAGGAAGCUUGAUGACUUUGAGAa----------------- l=25 a=2 
-------------------------------------UGACUUUGAGAUACUCUUG---------- l=19 a=1 
-----------------------------------------UUUGAGAUACUCUUGAAGCUGU--- l=22 a=1 

mb-00011
ax-1001011
ku-01
ss-100111101100
fn-011
